Structural Basis for Base Engagement and Stereochemistry Revealed by Alteration of Catalytic Residue Glu43 in DNA Repair Glycosylase MutY
Russelburg, L.P., Demir, M., Cedeno, K., David, S.S., Horvath, M.P.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Adenine DNA glycosylase | 365 | Geobacillus stearothermophilus | Mutation(s): 1  Gene Names: mutY EC: 3.2.2.31 | ![]() | |
UniProt | |||||
Find proteins for P83847 (Geobacillus stearothermophilus) Explore P83847  Go to UniProtKB:  P83847 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P83847 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3') | 11 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3') | 11 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SF4 (Subject of Investigation/LOI) Query on SF4 | G [auth A], L [auth D] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
TRS Query on TRS | K [auth B], P [auth E] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
EDO Query on EDO | J [auth A], O [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CA Query on CA | H [auth A], I [auth A], M [auth D], N [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 49.08 | α = 90 |
b = 137.9 | β = 101.44 |
c = 74.52 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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National Science Foundation (NSF, United States) | United States | 1905304 |
National Science Foundation (NSF, United States) | United States | 1905249 |
National Science Foundation (NSF, United States) | United States | 1610721 |
National Science Foundation (NSF, United States) | United States | 1608934 |