8B81

The structure of Gan1D W433A in complex with cellobiose-6-phosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.170 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The structure of Gan1D W433A in complex with cellobiose-6-phosphate

Snyder, J.Lansky, S.Zehavi, A.Shoham, Y.Shoham, G.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative 6-phospho-beta-galactobiosidase
A, B
478Geobacillus stearothermophilusMutation(s): 1 
Gene Names: gan1D
EC: 3.2.1.85
UniProt
Find proteins for W8QF82 (Geobacillus stearothermophilus)
Explore W8QF82 
Go to UniProtKB:  W8QF82
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW8QF82
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

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Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
6-O-phosphono-beta-D-glucopyranose-(1-4)-beta-D-glucopyranoseC [auth E],
D
2N/A
Glycosylation Resources
GlyTouCan:  G15380AW
GlyCosmos:  G15380AW
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.170 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 107.9α = 90
b = 68.38β = 99.36
c = 149.8γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not fundedIsrael--

Revision History  (Full details and data files)

  • Version 1.0: 2022-10-19
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description