8Y2H

GK tetramer of AtP5CS1 filament with adjacent hooks, reaction state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Dynamic Arabidopsis P5CS filament facilitates substrate channelling.

Guo, C.J.Zhang, T.Leng, Q.Zhou, X.Zhong, J.Liu, J.L.

(2024) Nat Plants 

  • DOI: https://doi.org/10.1038/s41477-024-01697-w
  • Primary Citation of Related Structures:  
    8J0F, 8Y2H

  • PubMed Abstract: 

    In plants, the rapid accumulation of proline is a common response to combat abiotic stress 1-7 . Delta-1-pyrroline-5-carboxylate synthase (P5CS) is a rate-limiting enzyme in proline synthesis, catalysing the initial two-step conversion from glutamate to proline 8 . Here we determine the first structure of plant P5CS. Our results show that Arabidopsis thaliana P5CS1 (AtP5CS1) and P5CS2 (AtP5CS2) can form enzymatic filaments in a substrate-sensitive manner. The destruction of AtP5CS filaments by mutagenesis leads to a significant reduction in enzymatic activity. Furthermore, separate activity tests on two domains reveal that filament-based substrate channelling is essential for maintaining the high catalytic efficiency of AtP5CS. Our study demonstrates the unique mechanism for the efficient catalysis of AtP5CS, shedding light on the intricate mechanisms underlying plant proline metabolism and stress response.


  • Organizational Affiliation

    School of Life Science and Technology, ShanghaiTech University, Shanghai, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Delta-1-pyrroline-5-carboxylate synthase A727Arabidopsis thalianaMutation(s): 0 
Gene Names: P5CSAP5CS1At2g39800T5I7.10
EC: 2.7.2.11 (PDB Primary Data), 1.2.1.41 (PDB Primary Data)
UniProt
Find proteins for P54887 (Arabidopsis thaliana)
Explore P54887 
Go to UniProtKB:  P54887
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP54887
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONcryoSPARC4.4.0

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-05
    Type: Initial release