8WD7 | pdb_00008wd7

Structural organization of the palisade layer in isolated vaccinia virus cores

• PDB DOI: https://doi.org/10.2210/pdb8WD7/pdb
• EM Map EMD-37456: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Vaccinia virus WR
• Mutation(s): No 


• Deposited: 2023-09-14 Released: 2024-09-18 
• Deposition Author(s): Liu, Y., Qu, X., Duan, M., Shi, X., Liu, S., Shi, Y., Gao, G.F.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 10.0 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SUBTOMOGRAM AVERAGING 

Starting Model: in silico

Literature

Cryo-ET reveals A10 protein as a major component of the poxvirus palisade layer

Liu, Y., Qu, X., Duan, M., Shi, X., Liu, S., Shi, Y., Gao, G.F.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 213.22 kDa 
• Atom Count: 1,842 
• Modelled Residue Count: 1,842 
• Deposited Residue Count: 1,842 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Core protein OPG136	A, B, C	614	Vaccinia virus WR	Mutation(s): 0
UniProt
Find proteins for P16715 (Vaccinia virus (strain Western Reserve)) Explore P16715  Go to UniProtKB:  P16715

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 10.0 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SUBTOMOGRAM AVERAGING 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.13

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-18 
Deposition Author(s): Liu, Y., Qu, X., Duan, M., Shi, X., Liu, S., Shi, Y., Gao, G.F.

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Funding Organization	Location	Grant Number
Other government	China	--

Revision History  

• Version 1.0: 2024-09-18
  Type: Initial release