Activation of Parkin by a Molecular Glue
Sauve, V., Gehring, K.(2024) Nat Commun 
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase parkin | 240 | Rattus norvegicus | Mutation(s): 0  Gene Names: Prkn, Park2 EC: 2.3.2.31 | ||
UniProt | |||||
Find proteins for Q9JK66 (Rattus norvegicus) Explore Q9JK66  Go to UniProtKB:  Q9JK66 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9JK66 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin | 75 | Homo sapiens | Mutation(s): 0  Gene Names: UBB | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG47 (Homo sapiens) Explore P0CG47  Go to UniProtKB:  P0CG47 | |||||
PHAROS:  P0CG47 GTEx:  ENSG00000170315  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CG47 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A1AE9 (Subject of Investigation/LOI) Query on A1AE9 | J [auth A] | (S)-1-(6-benzyl-3-(4-(1,2,3,4-tetrahydroquinoline-1-carbonyl)phenyl)-6,7-dihydropyrazolo[1,5-a]pyrazin-5(4H)-yl)ethan-1-one C31 H30 N4 O2 ZYSMPORNWLASGT-MHZLTWQESA-N | |||
GOL Query on GOL | K [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN Query on ZN | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | B, C | L-PEPTIDE LINKING | C3 H8 N O6 P | SER |
Length ( Å ) | Angle ( ˚ ) |
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a = 83.54 | α = 90 |
b = 83.54 | β = 90 |
c = 258.77 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data scaling |
XDS | data reduction |
PHENIX | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
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Canadian Institutes of Health Research (CIHR) | Canada | FDN 159903 |