8TX6

Crystal structure of an engineered variant of galactose oxidase, GOaseRd7BB, from Fusarium graminearum

PDB DOI: https://doi.org/10.2210/pdb8TX6/pdb

Classification: OXIDOREDUCTASE
Organism(s): Fusarium graminearum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-08-22 Released: 2024-07-03
Deposition Author(s): Selvaraj, B., Orth, P.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.56 Å
R-Value Free: 0.188
R-Value Work: 0.164
R-Value Observed: 0.165

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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Literature

Development of a Biocatalytic Aerobic Oxidation for the Manufacturing Route to Islatravir

Shaw, M.H., Fryszkowska, A., Alvizo, O., Attadgie, I., Borra-Garske, M., Devine, P.N., Duan, D., Grosser, S.T., Forstater, J.H., Hughes, G.J., Maloney, K.M., Margelefsky, E., Mattern, K.A., Miller, M.T., Nawrat, C.C., Nazor, J., Orth, P., Ouimet, C.M., Robaire, S.A., Ruccolo, S., Schwalm, E.L., Verma, D., Xiao, L., Selvaraj, B., Zhang, V.

(2023) ChemRxiv

DOI: https://doi.org/10.26434/chemrxiv-2023-fg10l

Macromolecule Content

Total Structure Weight: 70.18 kDa
Atom Count: 5,249
Modelled Residue Count: 638
Deposited Residue Count: 653
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Galactose oxidase	A	653	Fusarium graminearum	Mutation(s): 0 Gene Names: GAOA
UniProt
Find proteins for P0CS93 (Gibberella zeae) Explore P0CS93 Go to UniProtKB: P0CS93
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0CS93
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CU Query on CU Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A]	D [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.56 Å
R-Value Free: 0.188
R-Value Work: 0.164
R-Value Observed: 0.165
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 97.623	α = 90
b = 88.92	β = 117.82
c = 86.167	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
Aimless	data scaling
BUSTER	phasing

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2024-07-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded	United States	--

Revision History (Full details and data files)

Version 1.0: 2024-07-03
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.