Download MendeleyPasteurella multocida alpha2,3/2,6 sialyltransferase D141N bound to CMP
Stubbs, H.E., Iverson, T.M.To be published.
8SV2
Pasteurella multocida alpha2,3/2,6 sialyltransferase D141N bound to CMP
- PDB DOI: https://doi.org/10.2210/pdb8SV2/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Pasteurella multocida
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2023-05-15 Released: 2024-05-29
- Funding Organization(s): Department of Veterans Affairs (VA, United States), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), American Heart Association
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.254
- R-Value Work: 0.215
- R-Value Observed: 0.217
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alpha-2,3/2,6-sialyltransferase/sialidase | 388 | Pasteurella multocida | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q15KI8 (Pasteurella multocida) Explore Q15KI8 Go to UniProtKB: Q15KI8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q15KI8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| C5P (Subject of Investigation/LOI) Query on C5P | B [auth A] | CYTIDINE-5'-MONOPHOSPHATE C9 H14 N3 O8 P IERHLVCPSMICTF-XVFCMESISA-N |  | ||
| PGE Query on PGE | D [auth A], E [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| TRS Query on TRS | C [auth A] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.254
- R-Value Work: 0.215
- R-Value Observed: 0.217
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.598 | α = 90 |
| b = 66.401 | β = 90 |
| c = 96.383 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-05-29 Deposition Author(s): Stubbs, H.E., Iverson, T.M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Department of Veterans Affairs (VA, United States) | United States | R01AI130684 |
| Department of Veterans Affairs (VA, United States) | United States | R01AI106987 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM137458 |
| American Heart Association | United States | 14GRNT20390021 |
Revision History (Full details and data files)
- Version 1.0: 2024-05-29
Type: Initial release
