11 cysteine-to-serine mutations improve stability of cellodextrin phosphorylase from Clostridium thermocellum
Kuga, T., Sunagawa, N., Igarashi, K.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cellodextrin phosphorylase | 993 | Acetivibrio thermocellus | Mutation(s): 12  Gene Names: cdp-ym4 | ||
UniProt | |||||
Find proteins for Q93HT8 (Acetivibrio thermocellus) Explore Q93HT8  Go to UniProtKB:  Q93HT8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q93HT8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
TRS Query on TRS | BA [auth B], EA [auth B], G [auth A] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
PEG Query on PEG | HA [auth B], IA [auth B], L [auth A], M [auth A], N [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
SO4 (Subject of Investigation/LOI) Query on SO4 | GA [auth B], K [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | JA [auth B] KA [auth B] LA [auth B] MA [auth B] NA [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACT Query on ACT | CA [auth B] DA [auth B] E [auth A] F [auth A] FA [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
CL Query on CL | AA [auth A], VA [auth B], WA [auth B], XA [auth B], Z [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900021 Query on PRD_900021 | C, D | beta-cellotriose | Oligosaccharide / Metabolism |
Length ( Å ) | Angle ( ˚ ) |
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a = 83.208 | α = 98.58 |
b = 88.778 | β = 110.55 |
c = 88.761 | γ = 110.56 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science (JSPS) | Japan | 22J12566 |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | 18H05494 |