Download MendeleyGlutathione modulates metal binding to proteins.
Rosenbaum, J.C., Carlson, A.E.(null) Tbd
8DTA
Metal sensitive GFP (mseGFP) complexed with phenylarsine oxide.
- PDB DOI: https://doi.org/10.2210/pdb8DTA/pdb
- Classification: FLUORESCENT PROTEIN
- Organism(s): Aequorea victoria
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2022-07-25 Released: 2023-07-05
- Funding Organization(s): Other private
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.81 Å
- R-Value Free: 0.183
- R-Value Work: 0.164
- R-Value Observed: 0.165
Starting Model: experimental
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This is version 2.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Green fluorescent protein | 238 | Aequorea victoria | Mutation(s): 5 Gene Names: GFP |  | |
UniProt | |||||
Find proteins for P42212 (Aequorea victoria) Explore P42212 Go to UniProtKB: P42212 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P42212 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PA0 (Subject of Investigation/LOI) Query on PA0 | G [auth A] | Phenylarsine oxide C6 H5 As O BQVCCPGCDUSGOE-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | E [auth A], F [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CA Query on CA | D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CRO Query on CRO | A | L-PEPTIDE LINKING | C15 H17 N3 O5 |  | THR, TYR, GLY |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.81 Å
- R-Value Free: 0.183
- R-Value Work: 0.164
- R-Value Observed: 0.165
- Space Group: I 2 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 126.802 | α = 90 |
| b = 126.802 | β = 90 |
| c = 126.802 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-07-05 Deposition Author(s): Rosenbaum, J.C., Carlson, A.E.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other private | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-07-05
Type: Initial release - Version 1.1: 2023-10-25
Changes: Data collection, Refinement description - Version 1.2: 2023-11-15
Changes: Data collection - Version 2.0: 2024-01-31
Type: Coordinate replacement
Reason: Ligand geometry
Changes: Advisory, Atomic model, Database references, Derived calculations, Polymer sequence, Refinement description, Source and taxonomy, Structure summary - Version 2.1: 2024-11-06
Changes: Structure summary
