Download MendeleyEL222 from Erythrobacter litoralis.
Chaudhari, A., Koval, T., Andersson, I., Dohnalek, J., Fuertes, G.To be published.
8A5S
Crystal structure of light-activated DNA-binding protein EL222 from Erythrobacter litoralis crystallized in dark, measured illuminated.
- PDB DOI: https://doi.org/10.2210/pdb8A5S/pdb
- Classification: TRANSCRIPTION
- Organism(s): Erythrobacter litoralis HTCC2594
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-06-15 Released: 2023-07-05
- Funding Organization(s): Czech Academy of Sciences, European Regional Development Fund, Ministry of Education, Youth and Sports of the Czech Republic
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.215
- R-Value Work: 0.161
- R-Value Observed: 0.161
Starting Model: experimental
View more details
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Light-activated DNA-binding protein EL222 | A [auth AAA] | 210 | Erythrobacter litoralis HTCC2594 | Mutation(s): 0 Gene Names: ELI_04755 |  |
UniProt | |||||
Find proteins for Q2NB98 (Erythrobacter litoralis (strain HTCC2594)) Explore Q2NB98 Go to UniProtKB: Q2NB98 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2NB98 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMN (Subject of Investigation/LOI) Query on FMN | B [auth AAA] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | ||
| MES Query on MES | H [auth AAA] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth AAA], D [auth AAA] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| MG Query on MG | E [auth AAA], F [auth AAA], G [auth AAA] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| OHI Query on OHI | A [auth AAA] | L-PEPTIDE LINKING | C6 H7 N3 O3 |  | HIS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.215
- R-Value Work: 0.161
- R-Value Observed: 0.161
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.426 | α = 90 |
| b = 51.852 | β = 90 |
| c = 80.381 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PROTEUM PLUS | data collection |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-07-05 Deposition Author(s): Koval, T., Chaudhari, A., Fuertes, G., Andersson, I., Dohnalek, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Czech Academy of Sciences | Czech Republic | 86652036 |
| European Regional Development Fund | European Union | CZ.02.1.01/0.0/0.0/15_003/0000447 |
| Ministry of Education, Youth and Sports of the Czech Republic | Czech Republic | LM2018127 |
Revision History (Full details and data files)
- Version 1.0: 2023-07-05
Type: Initial release - Version 1.1: 2024-02-07
Changes: Data collection, Derived calculations, Refinement description
