Characterization and structural basis of D-cysteine desulfhydrase from Pectobacterium atrosepticum
Xu, X., Yang, L., Zhang, X., Xing, X., Zhou, J.(2022) Tetrahedron : 133174
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
D-Cysteine desulfhydrase | 371 | Pectobacterium atrosepticum SCRI1043 | Mutation(s): 0  Gene Names: ECA1531 EC: 4.4.1.15 | ||
UniProt | |||||
Find proteins for Q6D6Z8 (Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)) Explore Q6D6Z8  Go to UniProtKB:  Q6D6Z8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6D6Z8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | D [auth A], E [auth A], I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
FMT Query on FMT | C [auth A] F [auth A] G [auth A] H [auth A] J [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
EXA Query on EXA | A, B | PEPTIDE LINKING | C17 H27 N4 O9 P | LYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 68.38 | α = 90 |
b = 85.478 | β = 90 |
c = 123.091 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Ministry of Science and Technology (MoST, China) | China | 2019YFA09005000 |