7YLY

yeast TRiC-plp2 complex at S5 closed TRiC state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.05 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of plp2-mediated cytoskeletal protein folding by TRiC/CCT.

Han, W.Jin, M.Liu, C.Zhao, Q.Wang, S.Wang, Y.Yin, Y.Peng, C.Wang, Y.Cong, Y.

(2023) Sci Adv 9: eade1207-eade1207

  • DOI: https://doi.org/10.1126/sciadv.ade1207
  • Primary Citation of Related Structures:  
    7YLU, 7YLV, 7YLW, 7YLX, 7YLY

  • PubMed Abstract: 

    The cytoskeletal proteins tubulin and actin are the obligate substrates of TCP-1 ring complex/Chaperonin containing TCP-1 (TRiC/CCT), and their folding involves co-chaperone. Through cryo-electron microscopy analysis, we present a more complete picture of TRiC-assisted tubulin/actin folding along TRiC adenosine triphosphatase cycle, under the coordination of co-chaperone plp2. In the open S1/S2 states, plp2 and tubulin/actin engaged within opposite TRiC chambers. Notably, we captured an unprecedented TRiC-plp2-tubulin complex in the closed S3 state, engaged with a folded full-length β -tubulin and loaded with a guanosine triphosphate, and a plp2 occupying opposite rings. Another closed S4 state revealed an actin in the intermediate folding state and a plp2. Accompanying TRiC ring closure, plp2 translocation could coordinate substrate translocation on the CCT6 hemisphere, facilitating substrate stabilization and folding. Our findings reveal the folding mechanism of the major cytoskeletal proteins tubulin/actin under the coordination of the biogenesis machinery TRiC and plp2 and extend our understanding of the links between cytoskeletal proteostasis and related human diseases.


  • Organizational Affiliation

    State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai 200031, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit alphaA,
J [auth a]
559Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: TCP1CCT1YDR212WYD8142.13YD8142B.04
UniProt
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UniProt GroupP12612
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit betaB,
K [auth b]
527Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT2BIN3TCP2YIL142W
UniProt
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit deltaC [auth D],
L [auth d]
528Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT4
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit epsilonD [auth E],
M [auth e]
562Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT5TCP5YJR064WJ1752
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit gammaE [auth G],
N [auth g]
594Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT3BIN2TCP3YJL014WJ1336
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit etaF [auth H],
O [auth h]
550Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT7
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Phosducin-like protein 2G [auth P],
P [auth p]
286Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PLP2VIAF1YOR281C
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit thetaH [auth Q],
Q [auth q]
568Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT8YJL008CJ1374
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit zetaI [auth Z],
R [auth z]
546Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CCT6TCP20TCP6YDR188WYD9395.21
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP (Subject of Investigation/LOI)
Query on ADP

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BA [auth E]
BB [auth g]
EA [auth G]
EB [auth h]
HA [auth H]
BA [auth E],
BB [auth g],
EA [auth G],
EB [auth h],
HA [auth H],
HB [auth q],
JB [auth z],
LA [auth Q],
MA [auth Z],
PA [auth a],
S [auth A],
SA [auth b],
V [auth B],
VA [auth d],
Y [auth D],
YA [auth e]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
AF3 (Subject of Investigation/LOI)
Query on AF3

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AA [auth D]
AB [auth e]
DA [auth E]
DB [auth g]
GA [auth G]
AA [auth D],
AB [auth e],
DA [auth E],
DB [auth g],
GA [auth G],
GB [auth h],
JA [auth H],
LB [auth z],
OA [auth Z],
RA [auth a],
U [auth A],
UA [auth b],
X [auth B],
XA [auth d]
ALUMINUM FLUORIDE
Al F3
KLZUFWVZNOTSEM-UHFFFAOYSA-K
MG (Subject of Investigation/LOI)
Query on MG

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CA [auth E]
CB [auth g]
FA [auth G]
FB [auth h]
IA [auth H]
CA [auth E],
CB [auth g],
FA [auth G],
FB [auth h],
IA [auth H],
IB [auth q],
KA [auth Q],
KB [auth z],
NA [auth Z],
QA [auth a],
T [auth A],
TA [auth b],
W [auth B],
WA [auth d],
Z [auth D],
ZA [auth e]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.05 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2023-03-29 
  • Deposition Author(s): Han, W.Y.

Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChina--

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-29
    Type: Initial release
  • Version 1.1: 2024-07-03
    Changes: Data collection