Download MendeleyCrystal structure of JNK3 in complex with a fragment molecule
Ahn, H.-C., Duong, M.T.H.To be published.
7YL1
Crystal structure of JNK3 in complex with a fragment molecule
- PDB DOI: https://doi.org/10.2210/pdb7YL1/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-07-25 Released: 2023-07-26
- Funding Organization(s): National Research Foundation (NRF, Korea)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.48 Å
- R-Value Free: 0.294
- R-Value Work: 0.204
- R-Value Observed: 0.208
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mitogen-activated protein kinase 10 | 464 | Homo sapiens | Mutation(s): 0 Gene Names: MAPK10, JNK3, JNK3A, PRKM10, SAPK1B EC: 2.7.11.24 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P53779 (Homo sapiens) Explore P53779 Go to UniProtKB: P53779 | |||||
PHAROS: P53779 GTEx: ENSG00000109339 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P53779 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| J6F (Subject of Investigation/LOI) Query on J6F | B [auth A] | 7-hexyl-3-methyl-8-sulfanylidene-9H-purine-2,6-dione C12 H18 N4 O2 S UXIHCIYDMGYKSF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.48 Å
- R-Value Free: 0.294
- R-Value Work: 0.204
- R-Value Observed: 0.208
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.149 | α = 90 |
| b = 71.985 | β = 90 |
| c = 107.16 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-07-26 Deposition Author(s): Ahn, H.-C., Duong, M.T.H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Research Foundation (NRF, Korea) | Korea, Republic Of | NRF-2018R1D1A1B07050975 |
| National Research Foundation (NRF, Korea) | Korea, Republic Of | 2021R1F1A1063558 |
Revision History (Full details and data files)
- Version 1.0: 2023-07-26
Type: Initial release - Version 1.1: 2024-05-29
Changes: Data collection
