7XHP

Structure of a Glucose 6-Phosphate Dehydrogenase from Zymomonas mobilis

• PDB DOI: https://doi.org/10.2210/pdb7XHP/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Zymomonas mobilis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-04-09 Released: 2023-02-22 
• Deposition Author(s): Meng, D.D., Liu, M.X., Liu, W.D., You, C.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.78 Å
• R-Value Free: 0.289 
• R-Value Work: 0.233 
• R-Value Observed: 0.239 

Starting Model: experimental

Literature

Coenzyme Engineering of Glucose-6-phosphate Dehydrogenase on a Nicotinamide-Based Biomimic and Its Application as a Glucose Biosensor

Meng, D.D., Liu, M.X., Su, H., Song, H.Y., Chen, L.J., Li, Q.Z., Liu, Y.N., Zhu, Z.G., Liu, W.D., Sheng, X., You, C., Zhang, Y.H.

(2023) ACS Catal 13: 1983-1998

• DOI: https://doi.org/10.1021/acscatal.2c04707

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 440.53 kDa 
• Atom Count: 26,350 
• Modelled Residue Count: 3,483 
• Deposited Residue Count: 3,944 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glucose 6-Phosphate Dehydrogenase	A, B, C, D, E, F, G, H	493	Zymomonas mobilis	Mutation(s): 0  EC: 1.1.1.49
UniProt
Find proteins for P21907 (Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)) Explore P21907  Go to UniProtKB:  P21907

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.78 Å
• R-Value Free: 0.289 
• R-Value Work: 0.233 
• R-Value Observed: 0.239 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.61	α = 90
b = 101.073	β = 90.02
c = 321.066	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-02-22 
Deposition Author(s): Meng, D.D., Liu, M.X., Liu, W.D., You, C.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	21778073

Revision History  

• Version 1.0: 2023-02-22
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description