7WEZ

Crystal structure of RRM domain of Cyclophilin 33-like protein of Plasmodium falciparum

• PDB DOI: https://doi.org/10.2210/pdb7WEZ/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Plasmodium falciparum 3D7
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-12-24 Released: 2022-12-28 
• Deposition Author(s): Verma, G., Bhavesh, N.S.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.276 
• R-Value Work: 0.223 
• R-Value Observed: 0.225 

Starting Model: experimental

Literature

Crystal structure of RRM domain of Cyclophilin 33-like protein of Plasmodium falciparum

Verma, G., Bhavesh, N.S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 40.62 kDa 
• Atom Count: 2,625 
• Modelled Residue Count: 320 
• Deposited Residue Count: 356 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-binding protein, putative	A, B, C, D	89	Plasmodium falciparum 3D7	Mutation(s): 0  Gene Names: PF3D7_1320900
UniProt
Find proteins for C0H5C7 (Plasmodium falciparum (isolate 3D7)) Explore C0H5C7  Go to UniProtKB:  C0H5C7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	E [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.276 
• R-Value Work: 0.223 
• R-Value Observed: 0.225 
• Space Group: C 1 2 1
• Diffraction Data: https://doi.org/10.18430/M37WEZ

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.469	α = 90
b = 40.802	β = 115.57
c = 97.387	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
autoPROC	data reduction
autoPROC	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-12-28 
Deposition Author(s): Verma, G., Bhavesh, N.S.

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Funding Organization	Location	Grant Number
Other government		ICGEB New Delhi Core fund

Revision History  

• Version 1.0: 2022-12-28
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description