7WDR

Crystal structures of MeBglD2 in complex with various saccharides


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.189 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides

Matsuzawa, T.Watanabe, M.Nakamichi, Y.Akita, H.Yaoi, K.

(2022) Appl Microbiol Biotechnol 106: 4539-4551


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-glucosidase458metagenomeMutation(s): 1 
EC: 3.2.1.21
UniProt
Find proteins for A0A1E1FFN6 (uncultured microorganism)
Explore A0A1E1FFN6 
Go to UniProtKB:  A0A1E1FFN6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1E1FFN6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.189 
  • Space Group: I 4 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 201.847α = 90
b = 201.847β = 90
c = 201.847γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan--

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-02
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description