Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in complex with the reaction intermediates proline-adenylate (Pro-AMP) and pyrophosphate
Manickam, Y., Malhotra, N., Sharma, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Prolyl-tRNA synthetase | 500 | Toxoplasma gondii | Mutation(s): 0  Gene Names: TGRH88_057780 EC: 6.1.1.15 | ![]() | |
UniProt | |||||
Find proteins for A0A7J6JUK2 (Toxoplasma gondii) Explore A0A7J6JUK2  Go to UniProtKB:  A0A7J6JUK2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A7J6JUK2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PR8 (Subject of Investigation/LOI) Query on PR8 | C [auth A] | 5'-O-[(R)-hydroxy{[(2S)-pyrrolidin-2-ylcarbonyl]oxy}phosphoryl]adenosine C15 H21 N6 O8 P KQFKHTAASHMYDJ-TWBCTODHSA-N | |||
PPV Query on PPV | D [auth A] | PYROPHOSPHATE H4 O7 P2 XPPKVPWEQAFLFU-UHFFFAOYSA-N | |||
PRO Query on PRO | G [auth B] | PROLINE C5 H9 N O2 ONIBWKKTOPOVIA-BYPYZUCNSA-N | |||
EDO Query on EDO | E [auth A], F [auth A], H [auth B], I [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 77.08 | α = 90 |
b = 81.72 | β = 102.55 |
c = 105.26 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
PHENIX | refinement |
Funding Organization | Location | Grant Number |
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Department of Biotechnology (DBT, India) | India | PR32713 |