Crystal Structure of Putative glucose 1-dehydrogenase from Burkholderia cenocepacia in complex with NADP and a potential reaction product
Abendroth, J., DeBouwer, N.D., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative glucose 1-dehydrogenase | 256 | Burkholderia cenocepacia J2315 | Mutation(s): 0  Gene Names: BCAL1425 EC: 1.1.1.47 | ||
UniProt | |||||
Find proteins for B4E6Z1 (Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)) Explore B4E6Z1  Go to UniProtKB:  B4E6Z1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B4E6Z1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAP (Subject of Investigation/LOI) Query on NAP | GA [auth F] I [auth A] MA [auth G] N [auth B] QA [auth H] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N | |||
OUO (Subject of Investigation/LOI) Query on OUO | DA [auth E] JA [auth F] L [auth A] P [auth B] PA [auth G] | (2R)-2-(hydroxymethyl)pentanedioic acid C6 H10 O5 XPQIPNORJZZYPV-SCSAIBSYSA-N | |||
GOL Query on GOL | AA [auth E] CA [auth E] IA [auth F] J [auth A] NA [auth G] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CA Query on CA | BA [auth E] FA [auth E] HA [auth F] K [auth A] O [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
NA Query on NA | EA [auth E] KA [auth F] LA [auth F] M [auth A] Q [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 84.72 | α = 90 |
b = 116.66 | β = 90 |
c = 180.62 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
MoRDa | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700059C |