Human Synaptotagmin-1 C2B Y312F Ca2+ bound
Dominguez, M.J., Karmakar, S., Fuson, K.L., Sutton, R.B.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Synaptotagmin | 157 | Homo sapiens | Mutation(s): 0  Gene Names: SYT1, hCG_2016754 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for J3KQA0 (Homo sapiens) Explore J3KQA0  Go to UniProtKB:  J3KQA0 | |||||
GTEx:  ENSG00000067715  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | J3KQA0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
1PG Query on 1PG | I [auth A] | 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL C11 H24 O6 SLNYBUIEAMRFSZ-UHFFFAOYSA-N | |||
SO4 Query on SO4 | D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
CA (Subject of Investigation/LOI) Query on CA | B [auth A], C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A], F [auth A], G [auth A], H [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 54.29 | α = 90 |
b = 54.29 | β = 90 |
c = 102.3 | γ = 120 |
Software Name | Purpose |
---|---|
PHASER | phasing |
PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
xia2 | data reduction |
xia2 | data scaling |
Coot | model building |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of Mental Health (NIH/NIMH) | United States | 1R21MH070589-01 |