Development of PRPK Directed Phthalimides
Seo, H.-S., Mizutani, T., Hideshima, T., Vangos, N.E., Zhang, T., Anderson, K.C., Gray, N.S., Dhe-Paganon, S.(2021) bioRxiv 
Experimental Data Snapshot
Starting Models: experimental
View more details
(2021) bioRxiv 
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
EKC/KEOPS complex subunit TP53RK | 255 | Homo sapiens | Mutation(s): 0  Gene Names: TP53RK, C20orf64, PRPK EC: 3.6 (PDB Primary Data), 2.7.11.1 (PDB Primary Data) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96S44 (Homo sapiens) Explore Q96S44  Go to UniProtKB:  Q96S44 | |||||
PHAROS:  Q96S44 GTEx:  ENSG00000172315  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96S44 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
EKC/KEOPS complex subunit TPRKB | 178 | Homo sapiens | Mutation(s): 0  Gene Names: TPRKB, CGI-121, My019 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y3C4 (Homo sapiens) Explore Q9Y3C4  Go to UniProtKB:  Q9Y3C4 | |||||
PHAROS:  Q9Y3C4 GTEx:  ENSG00000144034  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9Y3C4 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DVO (Subject of Investigation/LOI) Query on DVO | E [auth A], F [auth C] | 2-[(3R)-3-methyl-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindole-5-carboxylic acid C15 H12 N2 O6 VWVJRXADTDRXRW-OAHLLOKOSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 65.578 | α = 90 |
b = 79.038 | β = 105.614 |
c = 100.889 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | -- |