7QNK

Structure of beta-lactamase TEM-171 complexed with tazobactam intermediate at 2.5 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.211 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Crystal structures of the molecular class A beta-lactamase TEM-171 and its complexes with tazobactam.

Grigorenko, V.G.Petrova, T.E.Carolan, C.Rubtsova, M.Y.Uporov, I.V.Pereira, J.Chojnowski, G.Samygina, V.R.Lamzin, V.S.Egorov, A.M.

(2022) Acta Crystallogr D Struct Biol 78: 825-834

  • DOI: https://doi.org/10.1107/S2059798322004879
  • Primary Citation of Related Structures:  
    7QLP, 7QNK, 7QOR

  • PubMed Abstract: 

    The resistance of bacteria to β-lactam antibiotics is primarily caused by the production of β-lactamases. Here, novel crystal structures of the native β-lactamase TEM-171 and two complexes with the widely used inhibitor tazobactam are presented, alongside complementary data from UV spectroscopy and fluorescence quenching. The six chemically identical β-lactamase molecules in the crystallographic asymmetric unit displayed different degrees of disorder. The tazobactam intermediate was covalently bound to the catalytic Ser70 in the trans-enamine configuration. While the conformation of tazobactam in the first complex resembled that in published β-lactamase-tazobactam structures, in the second complex, which was obtained after longer soaking of the native crystals in the inhibitor solution, a new and previously unreported tazobactam conformation was observed. It is proposed that the two complexes correspond to different stages along the deacylation path of the acyl-enzyme intermediate. The results provide a novel structural basis for the rational design of new β-lactamase inhibitors.


  • Organizational Affiliation

    Chemistry Department, M. V. Lomonosov Moscow State University, Moscow 119991, Russian Federation.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-lactamase TEM
A, B, C, D, E
A, B, C, D, E, F
263Escherichia coliMutation(s): 1 
Gene Names: blablaT-3blaT-4blaT-5blaT-6
EC: 3.5.2.6
UniProt
Find proteins for P62593 (Escherichia coli)
Explore P62593 
Go to UniProtKB:  P62593
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62593
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.211 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.501α = 90
b = 89.501β = 90
c = 500.895γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationEuropean Union15-14-00014-C
German Federal Ministry for Education and ResearchEuropean Union05K10YEA
European CommissionEuropean UnionH2020-EINFRA-2015-1-675858

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-13
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description