7PEK

Crystal structure of Triosephosphate Isomerase C216A mutant from Schizosaccharomyces pombe (SpTIM C216A)

PDB DOI: https://doi.org/10.2210/pdb7PEK/pdb

Classification: ISOMERASE
Organism(s): Schizosaccharomyces pombe 972h-
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2021-08-10 Released: 2022-08-24
Deposition Author(s): Romero-Romero, S., Garza-Ramos, G.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.74 Å
R-Value Free: 0.206
R-Value Work: 0.177
R-Value Observed: 0.177

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Triosephosphate Isomerase from Schizosaccharomyces pombe (SpTIM C216A)

Romero-Romero, S., Garza-Ramos, G.

To be published.

Macromolecule Content

Total Structure Weight: 109.58 kDa
Atom Count: 8,363
Modelled Residue Count: 983
Deposited Residue Count: 992
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Triosephosphate isomerase	A, B, C, D	248	Schizosaccharomyces pombe 972h-	Mutation(s): 1 Gene Names: tpi1, tpi, SPCC24B10.21 EC: 5.3.1.1
UniProt
Find proteins for P07669 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore P07669 Go to UniProtKB: P07669
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P07669
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain M [auth C] SDF format, chain R [auth D] SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain H [auth B] SDF format, chain L [auth C] SDF format, chain Q [auth D] MOL2 format, chain G [auth B] MOL2 format, chain M [auth C] MOL2 format, chain R [auth D] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain H [auth B] MOL2 format, chain L [auth C] MOL2 format, chain Q [auth D] mmCIF format, chain G [auth B] mmCIF format, chain M [auth C] mmCIF format, chain R [auth D] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain H [auth B] mmCIF format, chain L [auth C] mmCIF format, chain Q [auth D]	E [auth A] F [auth A] G [auth B] H [auth B] L [auth C] E [auth A], F [auth A], G [auth B], H [auth B], L [auth C], M [auth C], Q [auth D], R [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain L [auth C] Focus chain M [auth C] Focus chain Q [auth D] Focus chain R [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain L [auth C] Focus chain M [auth C] Focus chain Q [auth D] Focus chain R [auth D]
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain N [auth C] MOL2 format, chain N [auth C] mmCIF format, chain N [auth C]	N [auth C]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain N [auth C] Interactions & Density Focus chain N [auth C]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain J [auth B] SDF format, chain I [auth B] SDF format, chain K [auth B] MOL2 format, chain J [auth B] MOL2 format, chain I [auth B] MOL2 format, chain K [auth B] mmCIF format, chain J [auth B] mmCIF format, chain I [auth B] mmCIF format, chain K [auth B]	I [auth B], J [auth B], K [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain I [auth B] Focus chain J [auth B] Focus chain K [auth B] Interactions & Density Focus chain I [auth B] Focus chain J [auth B] Focus chain K [auth B]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain P [auth C] SDF format, chain O [auth C] MOL2 format, chain P [auth C] MOL2 format, chain O [auth C] mmCIF format, chain P [auth C] mmCIF format, chain O [auth C]	O [auth C], P [auth C]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain O [auth C] Focus chain P [auth C] Interactions & Density Focus chain O [auth C] Focus chain P [auth C]