X-ray structure of a cystein mutant of Cyclophilin A tethered to an aromatic oligoamide foldamer complexed with Cyclosporin A
Fischer, L., Savko, M., Langlois d'Estaintot, B., Buratto, J., Vallade, M., Huc, I.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptidyl-prolyl cis-trans isomerase A | A, C [auth D] | 165 | Homo sapiens | Mutation(s): 1  Gene Names: PPIA, CYPA EC: 5.2.1.8 | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62937 (Homo sapiens) Explore P62937  Go to UniProtKB:  P62937 | |||||
PHAROS:  P62937 GTEx:  ENSG00000196262  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62937 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cyclosporin A | B, D [auth E] | 11 | Tolypocladium inflatum | Mutation(s): 0  | ![]() |
Sequence AnnotationsExpand | |||||
|
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
7I7 Query on 7I7 | E [auth A], P [auth D] | N-[2-[2-[2-(2-formamidoethoxy)ethoxy]ethoxy]ethyl]-3-sulfanyl-propanamide C12 H24 N2 O5 S QOVHNXIZZNSLDI-UHFFFAOYSA-N | |||
7IB Query on 7IB | J [auth A], O [auth D] | 8-azanyl-5-(4-oxidanyl-4-oxidanylidene-butyl)quinoline-2-carboxylic acid C14 H14 N2 O4 AHGXWTCIRIDJEN-UHFFFAOYSA-N | |||
QUK Query on QUK | F [auth A], I [auth A], K [auth D], N [auth D] | 8-azanyl-4-(3-azanylpropoxy)quinoline-2-carboxylic acid C13 H15 N3 O3 QGMHWPPZJKLYHR-UHFFFAOYSA-N | |||
QUJ Query on QUJ | H [auth A], M [auth D] | 8-azanyl-4-(2-methylpropoxy)quinoline-2-carboxylic acid C14 H16 N2 O3 UQMUZAYVJKDBFB-UHFFFAOYSA-N | |||
QVS Query on QVS | G [auth A], L [auth D] | 8-azanyl-4-oxidanyl-quinoline-2-carboxylic acid C10 H8 N2 O3 KZBXAHDVCSOKJO-UHFFFAOYSA-N |
Modified Residues 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
ABA Query on ABA | B, D [auth E] | L-PEPTIDE LINKING | C4 H9 N O2 | ALA | |
BMT Query on BMT | B, D [auth E] | L-PEPTIDE LINKING | C10 H19 N O3 | THR | |
MLE Query on MLE | B, D [auth E] | L-PEPTIDE LINKING | C7 H15 N O2 | LEU | |
MVA Query on MVA | B, D [auth E] | L-PEPTIDE LINKING | C6 H13 N O2 | VAL | |
SAR Query on SAR | B, D [auth E] | PEPTIDE LINKING | C3 H7 N O2 | GLY |
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000142 Query on PRD_000142 | B, D [auth E] | Cyclosporin A | Cyclic peptide / Immunosuppressant |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 42.474 | α = 90 |
b = 70.891 | β = 102.7 |
c = 64.09 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
---|---|---|
Other government | France | -- |