7OKR

Catalytic domain from the Aliivibrio salmonicida lytic polysaccharide monooxygenase AsLPMO10B


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.162 
  • R-Value Work: 0.139 

Starting Model: experimental
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This is version 1.3 of the entry. See complete history


Literature

Chitinolytic enzymes contribute to the pathogenicity of Aliivibrio salmonicida LFI1238 in the invasive phase of cold-water vibriosis.

Skane, A.Edvardsen, P.K.Cordara, G.Loose, J.S.M.Leitl, K.D.Krengel, U.Sorum, H.Askarian, F.Vaaje-Kolstad, G.

(2022) BMC Microbiol 22: 194-194

  • DOI: https://doi.org/10.1186/s12866-022-02590-2
  • Primary Citation of Related Structures:  
    7OKR

  • PubMed Abstract: 

    Aliivibrio salmonicida is the causative agent of cold-water vibriosis in salmonids (Oncorhynchus mykiss and Salmo salar L.) and gadidae (Gadus morhua L.). Virulence-associated factors that are essential for the full spectrum of A. salmonicida pathogenicity are largely unknown. Chitin-active lytic polysaccharide monooxygenases (LPMOs) have been indicated to play roles in both chitin degradation and virulence in a variety of pathogenic bacteria but are largely unexplored in this context. In the present study we investigated the role of LPMOs in the pathogenicity of A. salmonicida LFI238 in Atlantic salmon (Salmo salar L.). In vivo challenge experiments using isogenic deletion mutants of the two LPMOs encoding genes AsLPMO10A and AsLPMO10B, showed that both LPMOs, and in particular AsLPMO10B, were important in the invasive phase of cold-water vibriosis. Crystallographic analysis of the AsLPMO10B AA10 LPMO domain (to 1.4 Å resolution) revealed high structural similarity to viral fusolin, an LPMO known to enhance the virulence of insecticidal agents. Finally, exposure to Atlantic salmon serum resulted in substantial proteome re-organization of the A. salmonicida LPMO deletion variants compared to the wild type strain, indicating the struggle of the bacterium to adapt to the host immune components in the absence of the LPMOs. The present study consolidates the role of LPMOs in virulence and demonstrates that such enzymes may have more than one function.


  • Organizational Affiliation

    Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chitinase BA [auth AAA]395Aliivibrio salmonicida LFI1238Mutation(s): 0 
Gene Names: VSAL_II0217
UniProt
Find proteins for B6EQJ6 (Aliivibrio salmonicida (strain LFI1238))
Explore B6EQJ6 
Go to UniProtKB:  B6EQJ6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB6EQJ6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.162 
  • R-Value Work: 0.139 
  • Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.003α = 90
b = 71.003β = 90
c = 100.203γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PHENIXrefinement
Cootmodel building

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Norwegian Research CouncilNorway249865

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-01
    Type: Initial release
  • Version 1.1: 2022-08-31
    Changes: Database references, Derived calculations
  • Version 1.2: 2024-01-31
    Changes: Data collection, Refinement description
  • Version 1.3: 2024-10-09
    Changes: Structure summary