Natural killer cell receptor NKR-P1B from Rattus norvegicus in complex with its cognate ligand Clr-11
Skalova, T., Vanek, O., Kalouskova, B., Skorepa, O., Blaha, J., Harlos, K., Dohnalek, J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
C-type lectin domain family 2 member D11 | 133 | Rattus norvegicus | Mutation(s): 1  Gene Names: Clec2d11, Clrb, Ocil | ||
UniProt | |||||
Find proteins for Q0H8B9 (Rattus norvegicus) Explore Q0H8B9  Go to UniProtKB:  Q0H8B9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q0H8B9 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | Go to GlyGen: Q0H8B9-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Killer cell lectin-like receptor subfamily B member 1B allele A | 151 | Rattus norvegicus | Mutation(s): 0  Gene Names: Klrb1b, Nkrp1b | ||
UniProt | |||||
Find proteins for A4KWA1 (Rattus norvegicus) Explore A4KWA1  Go to UniProtKB:  A4KWA1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A4KWA1 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | Go to GlyGen: A4KWA1-1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth A], H [auth B], I [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
ZN Query on ZN | G [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 111.593 | α = 90 |
b = 111.593 | β = 90 |
c = 110.107 | γ = 120 |
Software Name | Purpose |
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REFMAC | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
BALBES | phasing |
Funding Organization | Location | Grant Number |
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Czech Science Foundation | Czech Republic | 18-10687S |
Ministry of Education, Youth and Sports of the Czech Republic | Czech Republic | CZ.02.1.01/0.0/0.0/16_013/0001776 |