Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase
Kreibich, J., Jeoung, J.H., Dobbek, H.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
CO-methylating acetyl-CoA synthase | 734 | Carboxydothermus hydrogenoformans Z-2901 | Mutation(s): 0  Gene Names: acsB, CHY_1222 EC: 2.3.1.169 | ||
UniProt | |||||
Find proteins for Q3ACS4 (Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)) Explore Q3ACS4  Go to UniProtKB:  Q3ACS4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q3ACS4 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 8 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SF4 Query on SF4 | B [auth A] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
PG6 Query on PG6 | F [auth A], J [auth A], T [auth A], X [auth A] | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE C12 H26 O6 DMDPGPKXQDIQQG-UHFFFAOYSA-N | |||
MES Query on MES | R [auth A], S [auth A], V [auth A] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N | |||
PG4 Query on PG4 | G [auth A], K [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
PEG Query on PEG | H [auth A], I [auth A], U [auth A], W [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
SO4 Query on SO4 | L [auth A] M [auth A] N [auth A] O [auth A] P [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
NI (Subject of Investigation/LOI) Query on NI | C [auth A], D [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N | |||
MEE (Subject of Investigation/LOI) Query on MEE | E [auth A] | METHANETHIOL C H4 S LSDPWZHWYPCBBB-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 199.344 | α = 90 |
b = 199.344 | β = 90 |
c = 168.268 | γ = 120 |
Software Name | Purpose |
---|---|
XDS | data reduction |
PHENIX | refinement |
XSCALE | data scaling |
STARANISO | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation (DFG) | Germany | DO785/5-2 |
German Research Foundation (DFG) | Germany | EXC 2008 - 390540038 - UniSysCat |