CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions
Gerber, E.E., Digiananttonio, K.M., Tripler, T.N., Smaga, S.S., Summers, B.J., Xiong, Y.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein | 223 | Human immunodeficiency virus 1 | Mutation(s): 0  Gene Names: gag | ||
UniProt | |||||
Find proteins for P12493 (Human immunodeficiency virus type 1 group M subtype B (isolate NY5)) Explore P12493  Go to UniProtKB:  P12493 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12493 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Nanobody-GYAR | 113 | Lama glama | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 102.548 | α = 90 |
b = 140.378 | β = 113.896 |
c = 125.186 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
DENZO | data reduction |
HKL-2000 | data scaling |
PDB_EXTRACT | data extraction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | P50GM082251 |
National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | F32 GM131426 01A1 |