THE ALLOSTERIC SITE RESIDUE, E88 INTERACTS WITH THE INHIBITORS TO TRANSMIT THE ALLOSTERIC INHIBITION SIGNALS IN Cj.DHDPS BY FORMING A HYDROGEN BOND.
Saran, S., Majdi Yazdi, M., Chung, I., Sanders, D.A.R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
4-hydroxy-tetrahydrodipicolinate synthase | 310 | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 | Mutation(s): 1  Gene Names: dapA, Cj0806 EC: 4.3.3.7 | ||
UniProt | |||||
Find proteins for Q9PPB4 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q9PPB4  Go to UniProtKB:  Q9PPB4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9PPB4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGE Query on PGE | J [auth A], L [auth B], R [auth C], S [auth D], V [auth E] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
PEG Query on PEG | AA [auth F] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
EDO Query on EDO | CA [auth F], O [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACT Query on ACT | BA [auth F] M [auth B] N [auth B] T [auth D] W [auth E] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
MG Query on MG | G [auth A] H [auth A] I [auth A] K [auth B] P [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
KPI Query on KPI | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C9 H16 N2 O4 | LYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 85.16 | α = 90 |
b = 232.65 | β = 90 |
c = 201.86 | γ = 90 |
Software Name | Purpose |
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XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-3000 | data reduction |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | -- |