THE ALLOSTERIC SITE RESIDUE, E88 INTERACTS WITH THE INHIBITORS TO TRANSMIT THE ALLOSTERIC INHIBITION SIGNALS IN Cj.DHDPS BY FORMING A HYDROGEN BOND
Saran, S., Majdi Yazdi, M., Chung, I., Sanders, D.A.R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
4-hydroxy-tetrahydrodipicolinate synthase | 310 | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 | Mutation(s): 1  Gene Names: dapA, Cj0806 EC: 4.3.3.7 | ||
UniProt | |||||
Find proteins for Q9PPB4 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q9PPB4  Go to UniProtKB:  Q9PPB4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9PPB4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGE (Subject of Investigation/LOI) Query on PGE | CA [auth D], GA [auth E], I [auth A], S [auth B], X [auth C] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
PEG (Subject of Investigation/LOI) Query on PEG | P [auth A], PA [auth F], V [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
GOL (Subject of Investigation/LOI) Query on GOL | J [auth A], K [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
EDO (Subject of Investigation/LOI) Query on EDO | AA [auth C] BA [auth C] DA [auth D] HA [auth E] IA [auth E] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACT (Subject of Investigation/LOI) Query on ACT | EA [auth E], Q [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
MG (Subject of Investigation/LOI) Query on MG | FA [auth E] G [auth A] H [auth A] MA [auth F] R [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
KPI Query on KPI | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C9 H16 N2 O4 | LYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 85.13 | α = 90 |
b = 232.95 | β = 90 |
c = 202.06 | γ = 90 |
Software Name | Purpose |
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XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-3000 | data reduction |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | -- |