Download MendeleyCrystal structure of the second bromodomain (BD2) of human TAF1 bound to ZS1-322
Karim, M.R., Schonbrunn, E.To be published.
7JTC
Crystal structure of the second bromodomain (BD2) of human TAF1 bound to ZS1-322
- PDB DOI: https://doi.org/10.2210/pdb7JTC/pdb
- Classification: GENE REGULATION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-08-17 Released: 2021-08-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.232
- R-Value Work: 0.202
- R-Value Observed: 0.203
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcription initiation factor TFIID subunit 1 | 137 | Homo sapiens | Mutation(s): 0 Gene Names: TAF1, BA2R, CCG1, CCGS, TAF2A EC: 2.3.1.48 (PDB Primary Data), 2.7.11.1 (PDB Primary Data) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P21675 (Homo sapiens) Explore P21675 Go to UniProtKB: P21675 | |||||
GTEx: ENSG00000147133 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P21675 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| VK1 (Subject of Investigation/LOI) Query on VK1 | B [auth A] | 1-{6-[(3R)-3-methylmorpholin-4-yl]-2-(methylsulfanyl)pyrimidin-4-yl}cyclopropane-1-sulfonimidoamide C13 H21 N5 O2 S2 XGFQEZBAAOLAMH-SECBINFHSA-N |  | ||
| EDO Query on EDO | C [auth A], D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.232
- R-Value Work: 0.202
- R-Value Observed: 0.203
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.6 | α = 90 |
| b = 56.89 | β = 90 |
| c = 59.28 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2021-08-25 Deposition Author(s): Karim, M.R., Schonbrunn, E.
Revision History (Full details and data files)
- Version 1.0: 2021-08-25
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Refinement description
