Crystal structure of housekeeping sortase SrtA bound with self derived tripeptide from Lactobacillus rhamnosus GG
Pratap, S., Krishnan, V.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Class A sortase | 149 | Lacticaseibacillus rhamnosus | Mutation(s): 0 Gene Names: F5976_12260, F8M46_11135, FEZ43_04140, GKD16_09085, HWN39_00700, LRHP540_01088, PY91_04000 | ||
UniProt | |||||
Find proteins for A0A0E3D3H8 (Lacticaseibacillus rhamnosus) Explore A0A0E3D3H8 Go to UniProtKB: A0A0E3D3H8 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0E3D3H8 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Self Derived Peptide | C [auth F], D [auth G] | 3 | Lacticaseibacillus rhamnosus | Mutation(s): 0 | |
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | E [auth A], F [auth A], G [auth A], H [auth B], I [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
EDO Query on EDO | J [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A, B | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 34.608 | α = 90 |
b = 55.674 | β = 103.22 |
c = 75.312 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Department of Biotechnology (DBT, India) | India | BT/PR5891/BRB/10/1098/2012 |