7EW5

immune complex of HPV6 L1 pentamer and neutralizing antibody 13H5

• PDB DOI: https://doi.org/10.2210/pdb7EW5/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Human papillomavirus type 6, Mus musculus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-05-24 Released: 2022-06-01 
• Deposition Author(s): Wang, Z.P., Wang, D.N., Gu, Y., Li, S.W.
• Funding Organization(s): National Science Foundation (NSF, China)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.61 Å
• R-Value Free: 0.293 
• R-Value Work: 0.252 
• R-Value Observed: 0.254 

Literature

structure of HPV6 L1 pentamer in complex with neutralizing antibody 13H5

Wang, Z.P., Wang, D.N., Gu, Y., Li, S.W.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C5  (Explore in 3D)
Global Stoichiometry: Hetero 15-mer - A5B5C5 Pseudo Symmetry: Cyclic - C5  (Explore in 3D)
Pseudo Stoichiometry: Hetero 15-mer - A10B5 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Cyclic - C5  (Explore in 3D)
Global Stoichiometry: Hetero 15-mer - A5B5C5 Pseudo Symmetry: Cyclic - C5  (Explore in 3D)
Pseudo Stoichiometry: Hetero 15-mer - A10B5 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 1,024.21 kDa 
• Atom Count: 65,550 
• Modelled Residue Count: 8,480 
• Deposited Residue Count: 9,310 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein L1	A, B [auth D], C [auth G], D [auth J], E [auth M], F [auth P], G [auth S], H [auth V], I [auth Y], J [auth b]	496	Human papillomavirus type 6	Mutation(s): 0  Gene Names: L1
UniProt
Find proteins for Q9W9C6 (Human papillomavirus type 6) Explore Q9W9C6  Go to UniProtKB:  Q9W9C6

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Heavy chain of 13H5	AA [auth W], CA [auth Z], K [auth B], M [auth E], O [auth H], Q [auth K], S [auth N], U [auth g], W [auth Q], Y [auth T]	221	Mus musculus	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Light chain of 13H5	BA [auth X], DA [auth a], L [auth C], N [auth F], P [auth I], R [auth L], T [auth O], V [auth j], X [auth R], Z [auth U]	214	Mus musculus	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.61 Å
• R-Value Free: 0.293 
• R-Value Work: 0.252 
• R-Value Observed: 0.254 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 139.09	α = 90
b = 208.309	β = 95.61
c = 205.948	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-06-01 
Deposition Author(s): Wang, Z.P., Wang, D.N., Gu, Y., Li, S.W.

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Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History  

• Version 1.0: 2022-06-01
  Type: Initial release
  
• Version 1.1: 2022-06-08
  Changes: Derived calculations
• Version 1.2: 2023-11-29
  Changes: Data collection, Refinement description