7CZC

Crystal structure of apo-FabG from Vibrio harveyi

• PDB DOI: https://doi.org/10.2210/pdb7CZC/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Vibrio harveyi
• Expression System: Escherichia coli M15
• Mutation(s): No 


• Deposited: 2020-09-08 Released: 2021-09-08 
• Deposition Author(s): Singh, B.K., Kumar, A., Paul, B., Biswas, R., Das, A.K.
• Funding Organization(s): Department of Biotechnology (DBT, India)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.233 
• R-Value Work: 0.209 
• R-Value Observed: 0.211 

Starting Model: experimental

Literature

Crystal structure of apo-FabG from Vibrio harveyi

Singh, B.K., Kumar, A., Paul, B., Biswas, R., Das, A.K.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 104.13 kDa 
• Atom Count: 7,488 
• Modelled Residue Count: 951 
• Deposited Residue Count: 964 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-ACP reductase FabG	A, B, C, D	241	Vibrio harveyi	Mutation(s): 0  Gene Names: AL538_14035, VCHENC02_3091 EC: 1.1.1.100
UniProt
Find proteins for K5VE97 (Vibrio harveyi) Explore K5VE97  Go to UniProtKB:  K5VE97

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PEG (Subject of Investigation/LOI)	E [auth A], F [auth A]	DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.233 
• R-Value Work: 0.209 
• R-Value Observed: 0.211 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.459	α = 90
b = 91.32	β = 103.22
c = 94.158	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALA	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-09-08 
Deposition Author(s): Singh, B.K., Kumar, A., Paul, B., Biswas, R., Das, A.K.

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Funding Organization	Location	Grant Number
Department of Biotechnology (DBT, India)	India	BT/PR12404/BRB/10/1362/2014

Revision History  

• Version 1.0: 2021-09-08
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description