Cytochrome c oxidase structure in O-state
Kolbe, F., Safarian, S., Michel, H.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 1-beta | 558 | Paracoccus denitrificans | Mutation(s): 0  EC: 7.1.1.9 Membrane Entity: Yes  | ![]() | |
UniProt | |||||
Find proteins for P98002 (Paracoccus denitrificans) Explore P98002  Go to UniProtKB:  P98002 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P98002 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 2 | 298 | Paracoccus denitrificans | Mutation(s): 0  EC: 7.1.1.9 Membrane Entity: Yes  | ![]() | |
UniProt | |||||
Find proteins for P08306 (Paracoccus denitrificans) Explore P08306  Go to UniProtKB:  P08306 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P08306 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 3 | 274 | Paracoccus denitrificans | Mutation(s): 0  EC: 7.1.1.9 Membrane Entity: Yes  | ![]() | |
UniProt | |||||
Find proteins for P06030 (Paracoccus denitrificans) Explore P06030  Go to UniProtKB:  P06030 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06030 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 4 | 50 | Paracoccus denitrificans | Mutation(s): 0  EC: 7.1.1.9 Membrane Entity: Yes  | ![]() | |
UniProt | |||||
Find proteins for P77921 (Paracoccus denitrificans) Explore P77921  Go to UniProtKB:  P77921 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P77921 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 8 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEA (Subject of Investigation/LOI) Query on HEA | E [auth A], F [auth A] | HEME-A C49 H56 Fe N4 O6 ZGGYGTCPXNDTRV-PRYGPKJJSA-L | |||
PC1 Query on PC1 | R [auth C], S [auth C] | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE C44 H88 N O8 P NRJAVPSFFCBXDT-HUESYALOSA-N | |||
CUA Query on CUA | Q [auth B] | DINUCLEAR COPPER ION Cu2 ALKZAGKDWUSJED-UHFFFAOYSA-N | |||
CU Query on CU | G [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
MN Query on MN | P [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CA Query on CA | H [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
PEO Query on PEO | O [auth A] | HYDROGEN PEROXIDE H2 O2 MHAJPDPJQMAIIY-UHFFFAOYSA-N | |||
OXY Query on OXY | I [auth A] J [auth A] K [auth A] L [auth A] M [auth A] | OXYGEN MOLECULE O2 MYMOFIZGZYHOMD-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | Coot | 0.9 |
RECONSTRUCTION | RELION | 3.1 |
Funding Organization | Location | Grant Number |
---|---|---|
Max Planck Society | Germany | -- |