Domain mobility and allosteric activation of UbiD decarboxylases
Marshall, S.A., Payne, K.A.P., Leys, D.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Phenolic acid decarboxylase | 480 | Sedimentibacter hydroxybenzoicus | Mutation(s): 0  Gene Names: shdC, ohb1 EC: 4.1.1.63 (PDB Primary Data), 4.1.1.61 (PDB Primary Data) | ||
UniProt | |||||
Find proteins for Q9S4M7 (Sedimentibacter hydroxybenzoicus) Explore Q9S4M7  Go to UniProtKB:  Q9S4M7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9S4M7 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein ShdD | 68 | Sedimentibacter hydroxybenzoicus | Mutation(s): 0  Gene Names: shdD | ||
UniProt | |||||
Find proteins for Q4R102 (Sedimentibacter hydroxybenzoicus) Explore Q4R102  Go to UniProtKB:  Q4R102 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q4R102 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 7 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PEG Query on PEG | AA [auth C] GA [auth D] M [auth A] NA [auth E] PA [auth E] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
PO4 Query on PO4 | DA [auth C] JA [auth D] Q [auth A] TA [auth E] X [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
ZN Query on ZN | AB [auth a] BB [auth b] CB [auth c] DB [auth d] EB [auth e] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | OA [auth E] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | FA [auth C] LA [auth D] MA [auth D] S [auth A] T [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | EA [auth C] KA [auth D] R [auth A] UA [auth E] Y [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
NA Query on NA | BA [auth C] CA [auth C] HA [auth D] IA [auth D] N [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 270.92 | α = 90 |
b = 320.55 | β = 90 |
c = 326.23 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
xia2 | data reduction |
xia2 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | -- |