7X6S

lymphocytic choriomeningitis virus RNA-dependent RNA polymerase (LCMV-L protein)

PDB DOI: https://doi.org/10.2210/pdb7X6S/pdb
EM Map EMD-33026: EMDB EMDataResource

Classification: TRANSFERASE
Organism(s): Lymphocytic choriomeningitis virus (strain Armstrong)
Expression System: unidentified baculovirus
Mutation(s): No

Deposited: 2022-03-08 Released: 2023-09-13
Deposition Author(s): Liu, L., Lou, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure basis for allosteric regulation of lymphocytic choriomeningitis virus polymerase function by Z matrix protein.

Liu, L., Wang, P., Liu, A., Zhang, L., Yan, L., Guo, Y., Xiao, G., Rao, Z., Lou, Z.

(2023) Protein Cell 14: 703-707

PubMed: 37038286 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1093/procel/pwad018
Primary Citation of Related Structures:
7X6S, 7X6V

Organizational Affiliation

MOE Key Laboratory of Protein Science, School of Medicine, Tsinghua University, Beijing 100084, China.

Macromolecule Content

Total Structure Weight: 254.95 kDa
Atom Count: 10,987
Modelled Residue Count: 1,453
Deposited Residue Count: 2,210
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase L	A	2,210	Lymphocytic choriomeningitis virus (strain Armstrong)	Mutation(s): 0 EC: 3.1 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for P14240 (Lymphocytic choriomeningitis virus (strain Armstrong)) Explore P14240 Go to UniProtKB: P14240
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P14240
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MN (Subject of Investigation/LOI) Query on MN Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-09-13

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	U20A20135

Revision History (Full details and data files)

Version 1.0: 2023-09-13
Type: Initial release
Version 1.1: 2023-09-27
Changes: Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.