7V0H

Crystal Structure of Putative glucose 1-dehydrogenase from Burkholderia cenocepacia in complex with NADP and a potential reaction product


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.159 
  • R-Value Work: 0.139 
  • R-Value Observed: 0.139 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of Putative glucose 1-dehydrogenase from Burkholderia cenocepacia in complex with NADP and a potential reaction product

Abendroth, J.DeBouwer, N.D.Lorimer, D.D.Horanyi, P.S.Edwards, T.E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative glucose 1-dehydrogenase
A, B, C, D, E
A, B, C, D, E, F, G, H
256Burkholderia cenocepacia J2315Mutation(s): 0 
Gene Names: BCAL1425
EC: 1.1.1.47
UniProt
Find proteins for B4E6Z1 (Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610))
Explore B4E6Z1 
Go to UniProtKB:  B4E6Z1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB4E6Z1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAP (Subject of Investigation/LOI)
Query on NAP

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GA [auth F]
I [auth A]
MA [auth G]
N [auth B]
QA [auth H]
GA [auth F],
I [auth A],
MA [auth G],
N [auth B],
QA [auth H],
T [auth C],
V [auth D],
Z [auth E]
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
OUO (Subject of Investigation/LOI)
Query on OUO

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DA [auth E]
JA [auth F]
L [auth A]
P [auth B]
PA [auth G]
DA [auth E],
JA [auth F],
L [auth A],
P [auth B],
PA [auth G],
RA [auth H],
U [auth C],
Y [auth D]
(2R)-2-(hydroxymethyl)pentanedioic acid
C6 H10 O5
XPQIPNORJZZYPV-SCSAIBSYSA-N
GOL
Query on GOL

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AA [auth E]
CA [auth E]
IA [auth F]
J [auth A]
NA [auth G]
AA [auth E],
CA [auth E],
IA [auth F],
J [auth A],
NA [auth G],
W [auth D]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
CA
Query on CA

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BA [auth E]
FA [auth E]
HA [auth F]
K [auth A]
O [auth B]
BA [auth E],
FA [auth E],
HA [auth F],
K [auth A],
O [auth B],
OA [auth G],
S [auth B],
X [auth D]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
NA
Query on NA

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EA [auth E]
KA [auth F]
LA [auth F]
M [auth A]
Q [auth B]
EA [auth E],
KA [auth F],
LA [auth F],
M [auth A],
Q [auth B],
R [auth B]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.72α = 90
b = 116.66β = 90
c = 180.62γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
MoRDaphasing
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201700059C

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-08
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Data collection, Refinement description