Download MendeleyThiol-disulfide oxidoreductase in Corynebacterium diphtheriae
Osipiuk, J., Reardon-Robinson, M., Nguyen, M.T., Sanchez, B., Ton-That, H., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
7UNO
Thiol-disulfide oxidoreductase TsdA, C129S mutant, from Corynebacterium diphtheriae
- PDB DOI: https://doi.org/10.2210/pdb7UNO/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Corynebacterium diphtheriae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2022-04-11 Released: 2022-04-20
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/National Institute of Dental and Craniofacial Research (NIH/NIDCR)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.10 Å
- R-Value Free: 0.134
- R-Value Work: 0.116
- R-Value Observed: 0.117
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thioredoxin domain-containing protein | 260 | Corynebacterium diphtheriae | Mutation(s): 1 Gene Names: CIP107518_01391 |  | |
UniProt | |||||
Find proteins for Q6NJK4 (Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)) Explore Q6NJK4 Go to UniProtKB: Q6NJK4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6NJK4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGE Query on PGE | B [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.10 Å
- R-Value Free: 0.134
- R-Value Work: 0.116
- R-Value Observed: 0.117
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/m37uno
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.809 | α = 90 |
| b = 65.114 | β = 90 |
| c = 69.422 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-04-20 Deposition Author(s): Osipiuk, J., Reardon-Robinson, M., Nguyen, M.T., Sanchez, B., Ton-That, H., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201200026C |
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
| National Institutes of Health/National Institute of Dental and Craniofacial Research (NIH/NIDCR) | United States | 5R01DE025015-08 |
Revision History (Full details and data files)
- Version 1.0: 2022-04-20
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Refinement description
