7UNN

Thiol-disulfide oxidoreductase TsdA from Corynebacterium diphtheriae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.114 
  • R-Value Observed: 0.116 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A cryptic oxidoreductase safeguards oxidative protein folding in Corynebacterium diphtheriae.

Reardon-Robinson, M.E.Nguyen, M.T.Sanchez, B.C.Osipiuk, J.Ruckert, C.Chang, C.Chen, B.Nagvekar, R.Joachimiak, A.Tauch, A.Das, A.Ton-That, H.

(2023) Proc Natl Acad Sci U S A 120: e2208675120-e2208675120

  • DOI: https://doi.org/10.1073/pnas.2208675120
  • Primary Citation of Related Structures:  
    7UNN

  • PubMed Abstract: 

    In many gram-positive Actinobacteria, including Actinomyces oris and Corynebacterium matruchotii , the conserved thiol-disulfide oxidoreductase MdbA that catalyzes oxidative folding of exported proteins is essential for bacterial viability by an unidentified mechanism. Intriguingly, in Corynebacterium diphtheriae , the deletion of mdbA blocks cell growth only at 37 °C but not at 30 °C, suggesting the presence of alternative oxidoreductase enzyme(s). By isolating spontaneous thermotolerant revertants of the mdbA mutant at 37 °C, we obtained genetic suppressors, all mapped to a single T-to-G mutation within the promoter region of tsdA , causing its elevated expression. Strikingly, increased expression of tsdA -via suppressor mutations or a constitutive promoter-rescues the pilus assembly and toxin production defects of this mutant, hence compensating for the loss of mdbA . Structural, genetic, and biochemical analyses demonstrated TsdA is a membrane-tethered thiol-disulfide oxidoreductase with a conserved CxxC motif that can substitute for MdbA in mediating oxidative folding of pilin and toxin substrates. Together with our observation that tsdA expression is upregulated at nonpermissive temperature (40 °C) in wild-type cells, we posit that TsdA has evolved as a compensatory thiol-disulfide oxidoreductase that safeguards oxidative protein folding in C. diphtheriae against thermal stress.


  • Organizational Affiliation

    Department of Microbiology & Molecular Genetics, University of Texas McGovern Medical School, Houston, TX 77030.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thioredoxin domain-containing protein260Corynebacterium diphtheriaeMutation(s): 0 
Gene Names: CIP107518_01391
UniProt
Find proteins for Q6NJK4 (Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis))
Explore Q6NJK4 
Go to UniProtKB:  Q6NJK4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6NJK4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.174α = 90
b = 65.356β = 90
c = 68.852γ = 90
Software Package:
Software NamePurpose
HKL-3000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201200026C
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201700060C
National Institutes of Health/National Institute of Dental and Craniofacial Research (NIH/NIDCR)United States5R01DE025015-08

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-20
    Type: Initial release
  • Version 1.1: 2023-05-17
    Changes: Database references
  • Version 1.2: 2024-11-06
    Changes: Data collection, Structure summary