Structure of LPMO domain of colonization factor GbpA from Vibrio cholerae in the presence of calcium
Bjerregaard-Andersen, K., Krengel, U.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
GlcNAc-binding protein A | 180 | Vibrio cholerae O1 | Mutation(s): 0  Gene Names: gbpA, VC_A0811 | ![]() | |
UniProt | |||||
Find proteins for Q9KLD5 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KLD5  Go to UniProtKB:  Q9KLD5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9KLD5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CU Query on CU | C [auth A], E [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
CA (Subject of Investigation/LOI) Query on CA | D [auth A], F [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 40.61 | α = 90 |
b = 45.2 | β = 101.055 |
c = 99.59 | γ = 90 |
Software Name | Purpose |
---|---|
Coot | model building |
PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Norwegian Research Council | Norway | 247730 |