Structure of LPMO domain of colonization factor GbpA from Vibrio cholerae in the presence of potassium
Bjerregaard-Andersen, K., Krengel, U.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
GlcNAc-binding protein A | 180 | Vibrio cholerae O1 | Mutation(s): 0  Gene Names: gbpA, VC_A0811 | ||
UniProt | |||||
Find proteins for Q9KLD5 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KLD5  Go to UniProtKB:  Q9KLD5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9KLD5 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CU Query on CU | C [auth A], L [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
SCN Query on SCN | I [auth A], J [auth A], K [auth A], O [auth B], P [auth B] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M | |||
K Query on K | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 46.58 | α = 90 |
b = 46.58 | β = 90 |
c = 157.43 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
Coot | model building |
XDS | data reduction |
XSCALE | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Norwegian Research Council | Norway | 247730 |