7PA8

JC polyomavirus VP1 in complex with Fab 27C2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.212 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural characterization of human neutralizing antibodies against JC and BK polyomavirus

Harprecht, C.Stroeh, L.J.Senn, L.O'Hara, B.A.Nagel, F.Freytag, J.Stiehrof, Y.D.Atwood, W.J.Combaluzier, B.Stehle, T.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid protein VP1A [auth AAA],
B [auth BBB],
C [auth CCC],
D [auth DDD],
E [auth EEE]
272JC polyomavirusMutation(s): 0 
UniProt
Find proteins for P03089 (JC polyomavirus)
Explore P03089 
Go to UniProtKB:  P03089
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP03089
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Fab 27C2 light chainF [auth FFF],
G [auth GGG],
I [auth III],
K [auth KKK],
M [auth MMM]
212Homo sapiensMutation(s): 0 
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Fab 27C2 heavy chainH [auth HHH],
J [auth JJJ],
L [auth LLL],
N [auth NNN],
O [auth YYY]
398Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.212 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 137.07α = 90
b = 110.44β = 93.115
c = 158.21γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyFOR2327

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-08
    Type: Initial release
  • Version 1.1: 2024-02-07
    Changes: Data collection, Refinement description