C-terminal domain of RibD from Brucella abortus (5-amino-6-ribosylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate reductase)
Bonomi, H.R., Cerutti, M.L., Posadas, D.M., Goldbaum, F.A., Klinke, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Riboflavin biosynthesis protein RibD | 225 | Brucella abortus | Mutation(s): 0  Gene Names: ribD, E4190_008840 EC: 3.5.4.26 (PDB Primary Data), 1.1.1.193 (PDB Primary Data) | ||
UniProt | |||||
Find proteins for Q2YN93 (Brucella abortus (strain 2308)) Explore Q2YN93  Go to UniProtKB:  Q2YN93 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2YN93 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | E [auth A] F [auth A] G [auth A] H [auth B] I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 54.91 | α = 95.988 |
b = 56.7 | β = 91.249 |
c = 79.6 | γ = 113.164 |
Software Name | Purpose |
---|---|
MxCuBE | data collection |
XDS | data reduction |
Aimless | data scaling |
BALBES | phasing |
PHENIX | refinement |
REFMAC | refinement |
Coot | model building |
ARP/wARP | model building |
Funding Organization | Location | Grant Number |
---|---|---|
Agencia Nacional de Promocion Cientifica y Tecnologica (FONCYT) | Argentina | PICT 2014-0959 |