HelD, a helicase-like protein from gram-positive bacteria in complex with RNA polymerase
Kouba, T., Koval, T., Dohnalek, J., Krasny, L.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit alpha | 350 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0  Gene Names: rpoA, MSMEG_1524, MSMEI_1488 EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for A0QSL8 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QSL8  Go to UniProtKB:  A0QSL8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0QSL8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta | 1,169 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0  Gene Names: rpoB, MSMEG_1367, MSMEI_1328 EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for P60281 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore P60281  Go to UniProtKB:  P60281 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60281 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta' | 1,317 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0  Gene Names: rpoC, MSMEG_1368, MSMEI_1329 EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for A0QS66 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QS66  Go to UniProtKB:  A0QS66 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0QS66 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit omega | 107 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0  Gene Names: rpoZ, MSMEG_3053, MSMEI_2977 EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for A0QWT1 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QWT1  Go to UniProtKB:  A0QWT1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0QWT1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA polymerase-associated transcription factor HelD | F [auth H] | 736 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0  Gene Names: MSMEG_2174 EC: 3.6.4.12 | |
UniProt | |||||
Find proteins for A0QUE0 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QUE0  Go to UniProtKB:  A0QUE0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0QUE0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | G [auth D], H [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | I [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | RELION | 3.1 |