Crystal structure of the PDZ domain of human GOPC in complex with a peptide of E. coli O157:H7 str. Sakai effector NleG8
Popov, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Golgi-associated PDZ and coiled-coil motif-containing protein | 91 | Homo sapiens | Mutation(s): 0  Gene Names: GOPC, CAL, FIG | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9HD26 (Homo sapiens) Explore Q9HD26  Go to UniProtKB:  Q9HD26 | |||||
PHAROS:  Q9HD26 GTEx:  ENSG00000047932  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9HD26 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NleG8 peptide | 10 | Escherichia coli O157:H7 str. Sakai | Mutation(s): 0  Gene Names: NleG8 | ![]() | |
UniProt | |||||
Find proteins for Q8XAN6 (Escherichia coli O157:H7) Explore Q8XAN6  Go to UniProtKB:  Q8XAN6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8XAN6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | C [auth A], D [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
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a = 68.759 | α = 90 |
b = 68.759 | β = 90 |
c = 59.941 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHENIX | phasing |
PHENIX | model building |
Coot | model building |
Funding Organization | Location | Grant Number |
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Canadian Institutes of Health Research (CIHR) | Canada | -- |
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |