Cryo-EM Structure of Monomeric Photosystem II from Synechocystis sp. PCC 6803 Lacking the Water-Oxidation Complex
Gisriel, C.J., Zhou, K., Huang, H., Debus, R.J., Xiong, Y., Brudvig, G.W.(2020) Joule 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2020) Joule 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II protein D1 2 | 360 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  EC: 1.10.3.9 Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P16033 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P16033  Go to UniProtKB:  P16033 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16033 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II CP47 reaction center protein | 507 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P05429 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P05429  Go to UniProtKB:  P05429 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P05429 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II CP43 reaction center protein | 460 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P09193 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P09193  Go to UniProtKB:  P09193 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09193 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II D2 protein | 352 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  EC: 1.10.3.9 Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P09192 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P09192  Go to UniProtKB:  P09192 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09192 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome b559 subunit alpha | 81 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P09190 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P09190  Go to UniProtKB:  P09190 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09190 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome b559 subunit beta | 44 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P09191 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P09191  Go to UniProtKB:  P09191 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09191 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein H | G [auth H] | 64 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P14835 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P14835  Go to UniProtKB:  P14835 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14835 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein I | H [auth I] | 38 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for Q54697 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore Q54697  Go to UniProtKB:  Q54697 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q54697 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein K | I [auth K] | 45 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P15819 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P15819  Go to UniProtKB:  P15819 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P15819 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein L | J [auth L] | 39 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for Q55354 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore Q55354  Go to UniProtKB:  Q55354 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q55354 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein M | K [auth M] | 35 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P72701 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P72701  Go to UniProtKB:  P72701 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P72701 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein T | L [auth T] | 31 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P74787 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P74787  Go to UniProtKB:  P74787 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P74787 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center X protein | M [auth X] | 39 | Synechocystis sp. PCC 6803 substr. Kazusa | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P72575 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P72575  Go to UniProtKB:  P72575 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P72575 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 14 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGD Query on DGD | JB [auth C], ZB [auth H] | DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N | |||
CLA (Subject of Investigation/LOI) Query on CLA | AA [auth B] AB [auth C] BA [auth B] BB [auth C] CA [auth B] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
PHO Query on PHO | OB [auth D], Q [auth A] | PHEOPHYTIN A C55 H74 N4 O5 CQIKWXUXPNUNDV-RCBXBCQGSA-N | |||
SQD Query on SQD | DC [auth T] FC [auth T] GC [auth X] KB [auth C] PA [auth B] | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL C41 H78 O12 S RVUUQPKXGDTQPG-JUDHQOGESA-N | |||
LMG Query on LMG | QA [auth B], TA [auth C], XB [auth D] | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N | |||
PL9 Query on PL9 | TB [auth D], U [auth A] | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE C53 H80 O2 FKUYMLZIRPABFK-UHFFFAOYSA-N | |||
LHG Query on LHG | BC [auth L], UB [auth D], VB [auth D], WB [auth D] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
HEM Query on HEM | YB [auth E] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
BCR Query on BCR | HB [auth C] HC [auth X] IB [auth C] LB [auth C] MA [auth B] | BETA-CAROTENE C40 H56 OENHQHLEOONYIE-JLTXGRSLSA-N | |||
LMT Query on LMT | RA [auth B], SA [auth B] | DODECYL-BETA-D-MALTOSIDE C24 H46 O11 NLEBIOOXCVAHBD-QKMCSOCLSA-N | |||
FME Query on FME | AC [auth I], CC [auth M], EC [auth T] | N-FORMYLMETHIONINE C6 H11 N O3 S PYUSHNKNPOHWEZ-YFKPBYRVSA-N | |||
BCT Query on BCT | PB [auth D] | BICARBONATE ION C H O3 BVKZGUZCCUSVTD-UHFFFAOYSA-M | |||
FE2 Query on FE2 | N [auth A] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N | |||
CL Query on CL | MB [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Task | Software Package | Version |
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RECONSTRUCTION | RELION | 3.1 |
Funding Organization | Location | Grant Number |
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Department of Energy (DOE, United States) | United States | DE-FG02-05ER15646 |