Tdp1 catalytic domain
Lountos, G.T., Waugh, D.S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tyrosyl-DNA phosphodiesterase 1 | 461 | Homo sapiens | Mutation(s): 0  Gene Names: TDP1 EC: 3.1.4 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NUW8 (Homo sapiens) Explore Q9NUW8  Go to UniProtKB:  Q9NUW8 | |||||
PHAROS:  Q9NUW8 GTEx:  ENSG00000042088  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NUW8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SZV (Subject of Investigation/LOI) Query on SZV | D [auth A], G [auth B] | 4-{[2-(2-hydroxyphenyl)imidazo[1,2-a]pyrazin-3-yl]amino}benzene-1,2-dicarboxylic acid C20 H14 N4 O5 XBODYKBLJPPTJV-UHFFFAOYSA-N | |||
MPO Query on MPO | C [auth A] | 3[N-MORPHOLINO]PROPANE SULFONIC ACID C7 H15 N O4 S DVLFYONBTKHTER-UHFFFAOYSA-N | |||
EDO Query on EDO | E [auth A], F [auth A], H [auth B], I [auth B], J [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 49.719 | α = 90 |
b = 105.624 | β = 90 |
c = 194.105 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-3000 | data scaling |
PDB_EXTRACT | data extraction |
DENZO | data reduction |
PHASER | phasing |