DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (30 min)
Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed DNA/RNA polymerase mu | 356 | Homo sapiens | Mutation(s): 0  Gene Names: POLM, polmu EC: 2.7.7.7 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NP87 (Homo sapiens) Explore Q9NP87  Go to UniProtKB:  Q9NP87 | |||||
PHAROS:  Q9NP87 GTEx:  ENSG00000122678  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NP87 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*CP*GP*GP*CP*AP*TP*AP*CP*G)-3') | B [auth T] | 9 | synthetic construct | ![]() | |
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*CP*GP*TP*AP*(8GM))-3') | C [auth P] | 5 | synthetic construct | ![]() | |
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Entity ID: 4 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*GP*CP*CP*G)-3') | 4 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Ligands 8 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
8GT (Subject of Investigation/LOI) Query on 8GT | I [auth A] | 8-OXO-GUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O15 P3 JCHLKIQZUXYLPW-UMMCILCDSA-N | |||
EPE Query on EPE | O [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
PPV (Subject of Investigation/LOI) Query on PPV | R [auth P] | PYROPHOSPHATE H4 O7 P2 XPPKVPWEQAFLFU-UHFFFAOYSA-N | |||
DTT Query on DTT | J [auth A] | 2,3-DIHYDROXY-1,4-DITHIOBUTANE C4 H10 O2 S2 VHJLVAABSRFDPM-IMJSIDKUSA-N | |||
EDO Query on EDO | K [auth A], L [auth A], M [auth A], N [auth A], Q [auth P] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | P [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG (Subject of Investigation/LOI) Query on MG | E [auth A], F [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
NA (Subject of Investigation/LOI) Query on NA | G [auth A], H [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 59.982 | α = 90 |
b = 68.437 | β = 90 |
c = 110.615 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PDB_EXTRACT | data extraction |
PHENIX | phasing |
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Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS) | United States | Z01-ES050158 |
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS) | United States | Z01-10ES050161 |
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS) | United States | 1K99ES029572-01 |
Japan Society for the Promotion of Science (JSPS) | Japan | 16K16195 |