The crystal structure of a class D beta-lactamase from Agrobacterium tumefaciens
Tan, K., Wu, R., Endres, M., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-lactamase | 251 | Agrobacterium tumefaciens | Mutation(s): 1  Gene Names: oxa, AtA6_05530, BV900_07365 EC: 3.5.2.6 | ![]() | |
UniProt | |||||
Find proteins for A0A1V2APZ1 (Rhizobium radiobacter) Explore A0A1V2APZ1  Go to UniProtKB:  A0A1V2APZ1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A1V2APZ1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | I [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | E [auth A], G [auth B], H [auth C], J [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
FMT Query on FMT | F [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
KCX Query on KCX | A, B, C, D | L-PEPTIDE LINKING | C7 H14 N2 O4 | LYS | |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 58.119 | α = 90 |
b = 101.655 | β = 97.841 |
c = 108.142 | γ = 90 |
Software Name | Purpose |
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SBC-Collect | data collection |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
HKL-3000 | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |