Structure of the N-terminal domain of effector protein SpvB from Salmonella typhimurium strain LT2
Xu, C., Boniecki, M., Cygler, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Salmonella plasmid virulence: SpvB | 333 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Mutation(s): 0  Gene Names: spvB, spvA, PSLT039 | ||
UniProt | |||||
Find proteins for H9L477 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore H9L477  Go to UniProtKB:  H9L477 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | H9L477 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BTB Query on BTB | K [auth B] | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C8 H19 N O5 OWMVSZAMULFTJU-UHFFFAOYSA-N | |||
GOL Query on GOL | F [auth A] G [auth A] H [auth A] I [auth A] J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
AKR Query on AKR | C [auth A], D [auth A], E [auth A] | ACRYLIC ACID C3 H4 O2 NIXOWILDQLNWCW-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MLY Query on MLY | A, B | L-PEPTIDE LINKING | C8 H18 N2 O2 | LYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 101.351 | α = 90 |
b = 101.351 | β = 90 |
c = 211.302 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Canadian Institutes of Health Research (CIHR) | Canada | 48370 |